-- 2023年研究成果 --
L. A. Bergeron, S. Besenbacher, J. Zheng, P. Li, M. F. Bertelsen, B. Quintard, J. I. Hoffman, Z. Li, J. St Leger, C. Shao, J. Stiller, M. T. P. Gilbert, M. H. Schierup, G. Zhang. Evolution of the germline mutation rate across vertebrates. Nature 615, 285–291 (2023).
R. R. Germain, S. Feng, L. Buffan, C. P. Carmona, G. Chen, G. R. Graves, J. A. Tobias, C. Rahbek, F. Lei, J. Fjeldsa, P. A. Hosner, M. T. P. Gilbert, G. Zhang, D. Nogues-Bravo, Changes in the functional diversity of modern bird species over the last million years. PNAS 120(7): e2201945119. (2023).
P. Zhang, Y. Zhu, Q. Guo, J. Li, X. Zhan, H. Yu, N. Xie, H .Tan, Lundholm N, Garcia-Cuetos L, Martin M. D, Subirats M. A, Su Y. H, Ruiz-Trillo I, Martindale M. Q, Yu J. K, Gilbert M. T. P, G. Zhang, On the origin and evolution of RNA editing in metazoans. Cell Rep 42(2): 112112. (2023).
G. Zhang, The mutation rate as an evolving trait. Nat Rev Genet 24, 3 (2023).
-- 2022年研究成果 --
B. Qiu, X. Dai, P. Li, R. S. Larsen, R. Li, A. L. Price, G. Ding, M. J. Texada, X. Zhang, D. Zuo, Q. Gao, W. Jiang, T. Wen, L. Pontieri, C. Guo, K. Rewitz, Q. Li, W. Liu, J. J. Boomsma, G. Zhang, Canalized gene expression during development mediates caste differentiation in ants. Nat Ecol Evol, (2022).
X Li, R Gao, G Chen, A. L. Price, D. B.i Øksnebjerg, P. A. Hosner, Y Zhou, G. Zhang & S Feng, Draft genome assemblies of four manakins. Sci Data 9, 564 (2022).
Y. Ji, S. Feng, L. Wu, Q. Fang, A. Bruniche-Olsen, J. A. DeWoody, Y. Cheng, D. Zhang, Y. Hao, G. Song, Y. Qu, A. Suh, G. Zhang, S. J. Hackett, F. Lei, Orthologous microsatellites, transposable elements, and DNA deletions correlate with generation time and body mass in neoavian birds. Sci Adv 8, eabo0099 (2022).
L. Ferrandez-Peral, X. Zhan, M. Alvarez-Estape, C. Chiva, P. Esteller-Cucala, R. Garcia-Perez, E. Julia, E. Lizano, O. Fornas, E. Sabido, Q. Li, T. Marques-Bonet, D. Juan, G. Zhang, Transcriptome innovations in primates revealed by single-molecule long-read sequencing. Genome Res, (2022).
T. L. Cole, C. Zhou, M. Fang, H. Pan, D. T. Ksepka, S. R. Fiddaman, C. A. Emerling, D. B. Thomas, X. Bi, Q. Fang, M. R. Ellegaard, S. Feng, A. L. Smith, T. A. Heath, A. J. D. Tennyson, P. G. Borboroglu, J. R. Wood, P. W. Hadden, S. Grosser, C. A. Bost, Y. Cherel, T. Mattern, T. Hart, M. S. Sinding, L. D. Shepherd, R. A. Phillips, P. Quillfeldt, J. F. Masello, J. L. Bouzat, P. G. Ryan, D. R. Thompson, U. Ellenberg, P. Dann, G. Miller, P. Dee Boersma, R. Zhao, M. T. P. Gilbert, H. Yang, D. X. Zhang, G. Zhang, Genomic insights into the secondary aquatic transition of penguins. Nat Commun 13, 3912 (2022).
Q. Li, M. Wang, P. Zhang, Y. Liu, Q. Guo, Y. Zhu, T. Wen, X. Dai, X. Zhang, M. Nagel, B. H. Dethlefsen, N. Xie, J. Zhao, W. Jiang, L. Han, L. Wu, W. Zhong, Z. Wang, X. Wei, W. Dai, L. Liu, X. Xu, H. Lu, H. Yang, J. Wang, J. J. Boomsma, C. Liu, G. Zhang, W. Liu, A single-cell transcriptomic atlas tracking the neural basis of division of labour in an ant superorganism. Nat Ecol Evol, (2022).
Y. Mao and G. Zhang, A complete, telomere-to-telomere human genome sequence presents new opportunities for evo-lutionary genomics. Nat Methods 19, 635-638 (2022).
B. Demarchi, J. Stiller, A. Grealy, M. Mackie, Y. Deng, T. Gilbert, J. Clarke, L. J. Legendre, R. Boano, T. Sicheritz-Ponten, J. Magee, G. Zhang, M. Bunce, M. J. Collins, G. Miller, Ancient proteins resolve controversy over the identity of Genyornis eggshell. PNAS, e2109326119 (2022).
F. Li, R. V. Rane, V. Luria, Z. Xiong, J. Chen, Z. Li, R. A. Catullo, P. C. Griffin, M. Schiffer, S. Pearce, S. F. Lee, K. McElroy, A. Stocker, J. Shirriffs, F. Cockerell, C. Coppin, C. M. Sgro, A. Karger, J. W. Cain, J. A. Weber, G. Santpere, M. W. Kirschner, A. A. Hoffmann, J. G. Oakeshott, G. Zhang, Phylogenomic analyses of the genus Drosophila reveals genomic signals of climate adaptation. Mol Ecol Resour 22, 1559-1581 (2022).
S. Feng, M. Bai, I. Rivas-González, C. Li, S. Liu, Y. Tong, H. Yang, G. Chen, D. Xie, K. E. Sears, L. M. Franco, J. D. Gaitan-Espitia, R. F. Nespolo, W. E. Johnson, H. Yang, P. A. Brandies, C. J. Hogg, K. Belov, M. B. Renfree, K. M. Helgen, J. J. Boomsma, M. H. Schierup, G. Zhang, Incomplete lineage sorting and phenotypic evolution in marsupials. Cell, (2022).
E. L. Cavill*#, S. Gopalakrishnan, L. C. Puetz, . M. Ribeiro, S. S. T. Mak, R. R. da Fonseca, G. Pacheco, B. Dunlop, W. Accouche, N. Shah, A. Zora, L. Calabrese, M. Genner, G. Jones, C. Guo, G. Zhang and M. T. P. Gilbert, Conservation genomics of the endangered Seychelles Magpie‐Robin (Copsychus sechellarum): a unique insight into the history of a precious endemic bird. Ibis 164, 396-410 (2022).
G. Ding, Q. Gao, J. Chen, J. Zhao, G. Zhang, W. Liu, Validation of Potential Reference Genes for Real-Time qPCR Analysis in Pharaoh Ant, Monomorium pharaonis (Hymenoptera: Formicidae). Front Physiol 13, 852357 (2022).
S. R. Fiddaman, M. Vinkler, S. G. Spiro, H. Levy, C. A. Emerling, A. C. Boyd, E. A. Dimopoulos, J. A. Vianna, T. L. Cole, H. Pan, M. Fang, G. Zhang, T. Hart, L. A. F. Frantz, A. L. Smith, Adaptation and Cryptic Pseudogenization in Penguin Toll-Like Receptors. Mol Biol Evol 39, (2022).
Z. Wang, J. Zhang, X. Xu, C. Witt, Y. Deng, G. Chen, G. Meng, S. Feng, L. Xu, T. Szekely, G. Zhang, Q. Zhou, Phylogeny and sex chromosome evolution of Palaeognathae. JGG, 49, 109-119 (2022).
M. K. N. Lawniczak, R. Durbin, P. Flicek, K. Lindblad-Toh, X. Wei, J. M. Archibald, W. J. Baker, K. Belov, M. L. Blaxter, T. Marques Bonet, A. K. Childers, J. A. Coddington, K. A. Crandall, A. J. Crawford, R. P. Davey, F. Di Palma, Q. Fang, W. Haerty, N. Hall, K. J. Hoff, K. Howe, E. D. Jarvis, W. E. Johnson, R. N. Johnson, P. J. Kersey, X. Liu, J. V. Lopez, E. W. Myers, O. V. Pettersson, A. M. Phillippy, M. F. Poelchau, K. D. Pruitt, A. Rhie, J. C. Castilla-Rubio, S. K. Sahu, N. A. Salmon, P. S. Soltis, D. Swarbreck, F. Thibaud-Nissen, S. Wang, J. L. Wegrzyn, G. Zhang, H. Zhang, H. A. Lewin, S. Richards, Standards recommendations for the Earth BioGenome Project. PNAS, 119, (2022).
L. A. Bergeron, S. Besenbacher, T. Turner, C. J. Versoza, R. J. Wang, A. L. Price, E. Armstrong, M. Riera, J. Carlson, H. Y. Chen, M. W. Hahn, K. Harris, A. S. Kleppe, E. H. Lopez-Nandam, P. Moorjani, S. P. Pfeifer, G. P. Tiley, A. D. Yoder, G. Zhang, M. H. Schierup, The Mutationathon highlights the importance of reaching standardization in estimates of pedigree-based germline mutation rates. Elife 11, (2022).
H. A. Lewin, S. Richards, E. Lieberman Aiden, M. L. Allende, J. M. Archibald, M. Balint, K. B. Barker, B. Baumgartner, K. Belov, G. Bertorelle, M. L. Blaxter, J. Cai, N. D. Caperello, K. Carlson, J. C. Castilla-Rubio, S. M. Chaw, L. Chen, A. K. Childers, J. A. Coddington, D. A. Conde, M. Corominas, K. A. Crandall, A. J. Crawford, F. DiPalma, R. Durbin, T. E. Ebenezer, S. V. Edwards, O. Fedrigo, P. Flicek, G. Formenti, R. A. Gibbs, M. T. P. Gilbert, M. M. Goldstein, J. M. Graves, H. T. Greely, I. V. Grigoriev, K. J. Hackett, N. Hall, D. Haussler, K. M. Helgen, C. J. Hogg, S. Isobe, K. S. Jakobsen, A. Janke, E. D. Jarvis, W. E. Johnson, S. J. M. Jones, E. K. Karlsson, P. J. Kersey, J. H. Kim, W. J. Kress, S. Kuraku, M. K. N. Lawniczak, J. H. Leebens-Mack, X. Li, K. Lindblad-Toh, X. Liu, J. V. Lopez, T. Marques-Bonet, S. Mazard, J. A. K. Mazet, C. J. Mazzoni, E. W. Myers, R. J. O'Neill, S. Paez, H. Park, G. E. Robinson, C. Roquet, O. A. Ryder, J. S. M. Sabir, H. B. Shaffer, T. M. Shank, J. S. Sherkow, P. S. Soltis, B. Tang, L. Tedersoo, M. Uliano-Silva, K. Wang, X. Wei, R. Wetzer, J. L. Wilson, X. Xu, H. Yang, A. D. Yoder, G. Zhang, The Earth BioGenome Project 2020: Starting the clock. PNAS, 119, (2022).
M. Blaxter, J. M. Archibald, A. K. Childers, J. A. Coddington, K. A. Crandall, F. Di Palma, R. Durbin, S. V. Edwards, J. A. M. Graves, K. J. Hackett, N. Hall, E. D. Jarvis, R. N. Johnson, E. K. Karlsson, W. J. Kress, S. Kuraku, M. K. N. Lawniczak, K. Lindblad-Toh, J. V. Lopez, N. A. Moran, G. E. Robinson, O. A. Ryder, B. Shapiro, P. S. Soltis, T. Warnow, G. Zhang, H. A. Lewin, Why sequence all eukaryotes? PNAS, 119, e2115636118 (2022).
G. Formenti, K. Theissinger, C. Fernandes, I. Bista, A. Bombarely, C. Bleidorn, C. Ciofi, A. Crottini, J. A. Godoy, J. Hoglund, J. Malukiewicz, A. Mouton, R. A. Oomen, S. Paez, P. J. Palsboll, C. Pampoulie, M. J. Ruiz-Lopez, H. Svardal, C. Theofanopoulou, J. de Vries, A. M. Waldvogel, G. Zhang, C. J. Mazzoni, E. D. Jarvis, M. Balint, C. European Reference Genome Atlas, The era of reference genomes in conservation genomics. Trends Ecol Evol 37, 197-202 (2022).
D. D. Wu, X. G. Qi, L. Yu, M. Li, Z. J. Liu, A. D. Yoder, C. Roos, T. Hayakawa, J. Rogers, T. Marques-Bonet, B. Su, Y. G. Yao, Y. P. Zhang, G. Zhang, Initiation of the Primate Genome Project. Zool Res 43, 147-149 (2022).
-- 2021年研究成果 --
L. A. Bergeron, S. Besenbacher, M. H. Schierup, G. Zhang, Studying mutation rate evolution in primates-a need for systematic comparison of computational pipelines. Gigascience 10, (2021).
C. Yang, G. Zhang, Callithrix jacchus (the common marmoset). Trends Genet 37, 948-949 (2021).
M. S. Wang, J. J. Zhang, X. Guo, M. Li, R. Meyer, H. Ashari, Z. Q. Zheng, S. Wang, M. S. Peng, Y. Jiang, M. Thakur, C. Suwannapoom, A. Esmailizadeh, N. Y. Hirimuthugoda, M. S. A. Zein, S. Kusza, H. Kharrati-Koopaee, L. Zeng, Y. M. Wang, T. T. Yin, M. M. Yang, M. L. Li, X. M. Lu, E. Lasagna, S. Ceccobelli, H. Gunwardana, T. M. Senasig, S. H. Feng, H. Zhang, A. Bhuiyan, M. S. Khan, G. Silva, L. T. Thuy, O. A. Mwai, M. N. M. Ibrahim, G. Zhang, K. X. Qu, O. Hanotte, B. Shapiro, M. Bosse, D. D. Wu, J. L. Han, Y. P. Zhang, Large-scale genomic analysis reveals the genetic cost of chicken domestication. BMC Biol 19, 118 (2021).
P. A. O’Brien, N. Andreakis, S. Tan, D. J. Miller, N. S. Webster, G. Zhang, D. G. Bourne, Testing cophylogeny between coral reef invertebrates and their bacterial and archaeal symbionts. Mol Ecol 30, 3768-3782 (2021).
L. Schrader, H. Pan, M. Bollazzi, M. Schiøtt, F. J. Larabee, X. Bi, Y. Deng, G. Zhang, J. J. Boomsma, C. Rabeling, Relaxed selection underlies genome erosion in socially parasitic ant species. Nat Commun 12, 1-13 (2021).
L. A. Bergeron, S. Besenbacher, J. Bakker, J. Zheng, P. Li, G. Pacheco, M. S. Sinding, M. Kamilari, M. T. P. Gilbert, M. H. Schierup, G. Zhang, The germline mutational process in rhesus macaque and its implications for phylogenetic dating. Gigascience 10, (2021).
C. Yang, Y. Zhou, S. Marcus, G. Formenti, L. A. Bergeron, Z. Song, X. Bi, J. Bergman, M. M. C. Rousselle, C. Zhou, L. Zhou, Y. Deng, M. Fang, D. Xie, Y. Zhu, S. Tan, J. Mountcastle, B. Haase, J. Balacco, J. Wood, W. Chow, A. Rhie, M. Pippel, M. M. Fabiszak, S. Koren, O. Fedrigo, W. A. Freiwald, K. Howe, H. Yang, A. M. Phillippy, M. H. Schierup, E. D. Jarvis, G. Zhang, Evolutionary and biomedical insights from a marmoset diploid genome assembly. Nature 594, 227-233 (2021).
X. Bi, G. Zhang, Ancestral developmental potentials in early bony fish contributed to vertebrate water-to-land transition. Zool Res 42, 135-137 (2021).
Y. Qu, C. Chen, X. Chen, Y. Hao, H. She, M. Wang, P. G. P. Ericson, H. Lin, T. Cai, G. Song, C. Jia, C. Chen, H. Zhang, J. Li, L. Liang, T. Wu, J. Zhao, Q. Gao, G. Zhang, W. Zhai, C. Zhang, Y. E. Zhang, F. Lei, The evolution of ancestral and species-specific adaptations in snowfinches at the Qinghai-Tibet Plateau. Proceedings of the National Academy of Sciences 118, e2012398118 (2021).
K. Wang, J. Wang, C. Zhu, L. Yang, Y. Ren, J. Ruan, G. Fan, J. Hu, W. Xu, X. Bi, Y. Zhu, Y. Song, H. Chen, T. Ma, R. Zhao, H. Jiang, B. Zhang, C. Feng, Y. Yuan, X. Gan, Y. Li, H. Zeng, Q. Liu, Y. Zhang, F. Shao, S. Hao, H. Zhang, X. Xu, X. Liu, D. Wang, M. Zhu, G. Zhang, W. Zhao, Q. Qiu, S. He, W. Wang, African lungfish genome sheds light on the vertebrate water-to-land transition. Cell 184, 1362-1376 e18 (2021).
X. Bi, K. Wang, L. Yang, H. Pan, H. Jiang, Q. Wei, M. Fang, H. Yu, C. Zhu, Y. Cai, Y. He, X. Gan, H. Zeng, D. Yu, Y. Zhu, H. Jiang, Q. Qiu, H. Yang, Y. E. Zhang, W. Wang, M. Zhu, S. He, G. Zhang, Tracing the genetic footprints of vertebrate landing in non-teleost ray-finned fishes. Cell 184, 1377-1391 e14 (2021).
J. Liu, Z. Wang, J. Li, L. Xu, J. Liu, S. Feng, C. Guo, S. Chen, Z. Ren, J. Rao, K. Wei, Y. Chen, E. D. Jarvis, G. Zhang, Q. Zhou, A new emu genome illuminates the evolution of genome configuration and nuclear architecture of avian chromosomes. Genome Res 31, 497-511 (2021).
Z. Wang, G. Chen, G. Zhang, Q. Zhou, Dynamic evolution of transposable elements, demographic history, and gene content of paleognathous birds. Zool Res 42, 51-61 (2021).
S. Andreu-Sanchez, W. Chen, J. Stiller, G. Zhang, Multiple origins of a frameshift insertion in a mitochondrial gene in birds and turtles. Gigascience 10, (2021).
M. M. Ciucani, J. K. Jensen, M.-H. S. Sinding, O. Smith, S. B. Lucenti, E. Rosengren, L. Rook, C. Tuveri, M. Area, E. Cappellini, M. Galaverni, E. Randi, C. Guojie, G. Zhang, T. Sicheritz-Pontén, L. Dalén, M. T. P. Gilbert, S. Gopalakrishnan, Genomic analyses of the extinct Sardinian dhole (Cynotherium sardous) reveal its evolutionary history. bioRxiv, (2021).
Y. Zhou, L. Shearwin-Whyatt, J. Li, Z. Song, T. Hayakawa, D. Stevens, J. Fenelon, E. Peel, Y. Cheng,F. Pajpach, N. Bradley, H. Suzuki, M. Nikaido, J. Damas, T. Daish, T. Perry, Z. Zhu, Y. Geng, A. Rhie, Y.Sims, J. Wood, B. Haase, J. Mountcastle, O. Fedrigo, Q. Li, H. Yang, J. Wang, S. Johnston, A.M. Phillippy,K. Howe, E.D. Jarvis, O. Ryder, H. Kaessmann, P. Donnelly, J. Korlach, H. Lewin, J. Graves, K. Belov, M.B. Renfree, F. Grutzner , Q. Zhou, G. Zhang. Platypus and echidna genomes reveal mammalian biology and evolution. Nature 592, 756-762 (2021).
J. Li, J. Zhang, J. Liu, Y. Zhou, C. Cai, L. Xu, X. Dai, S. Feng, C. Guo, J. Rao, K. Wei, E. D. Jarvis, Y. Jiang, Z. Zhou, G. Zhang, Q. Zhou, A new duck genome reveals conserved and convergently evolved chromosome architectures of birds and mammals. Gigascience 10, (2021).
-- 2020年研究成果 --
M. Nagel, B. Qiu, L. E. Brandenborg, R. S. Larsen, D. Ning, J. J. Boomsma, G. Zhang, The Gene Expression Network Regulating Queen Brain Remodeling after Insemination and Its Parallel Use in Ants with Reproductive Workers. Sci Adv 6, eaaz5772 (2020).
E. Lord, N. Dussex, M. Kierczak, D. Diez-Del-Molino, O. A. Ryder, D. W. G. Stanton, M. T. P. Gilbert, F. Sanchez-Barreiro, G. Zhang, M. S. Sinding, E. D. Lorenzen, E. Willerslev, A. Protopopov, F. Shidlovskiy, S. Fedorov, H. Bocherens, S. Nathan, B. Goossens, J. van der Plicht, Y. L. Chan, S. Prost, O. Potapova, I. Kirillova, A. M. Lister, P. D. Heintzman, J. D. Kapp, B. Shapiro, S. Vartanyan, A. Götherström, L. Dalen, Pre-Extinction Demographic Stability and Genomic Signatures of Adaptation in the Woolly Rhinoceros. Curr Biol, (2020).
M. Sandoval-Velasco, J. A. Rodríguez, C. Perez Estrada, G. Zhang, E. Lieberman Aiden, M. A. Marti-Renom, M. T. P. Gilbert, O. Smith, Hi-C Chromosome Conformation Capture Sequencing of Avian Genomes Using the Bgiseq-500 Platform. GigaScience 9, (2020).
A.Avalos, M. Fang, H. Pan, A. Ramirez Lluch, A.E. Lipka, S.D. Zhao, T. Giray, G.E. Robinson,G. Zhang, M.E. Hudson, Genomic Regions Influencing Aggressive Behavior in Honey Bees Are Defined by Colony Allele Frequencies. PNAS, (2020).
M. de Manuel, R. Barnett, M. Sandoval-Velasco, N. Yamaguchi, F. Garrett Vieira, M.L. Zepeda Mendoza, S. Liu, M.D. Martin, M.S. Sinding, S.S.T. Mak, C. Caroe, S. Liu, C. Guo, J. Zheng, G. Zazula, G. Baryshnikov, E. Eizirik, K.P. Koepfli, W.E. Johnson, A. Antunes, T. Sicheritz-Ponten, S. Gopalakrishnan, G. Larson, H. Yang, S.J. O'Brien, A.J. Hansen, G. Zhang, T. Marques-Bonet, M.T.P. Gilbert, The Evolutionary History of Extinct and Living Lions. PNAS, 117, 10927-10934 (2020).
P.A. OBrien, S. Tan, C. Yang, P.R. Frade, N. Andreakis, H.A. Smith, D.J. Miller, N.S. Webster, G. Zhang, D.G. Bourne, Diverse Coral Reef Invertebrates Exhibit Patterns of Phylosymbiosis. The ISME Journal, 1-12 (2020).
Y. Shao, X. Wang, J. Zhang, M. Li, S. Wu, X. Ma, X. Wang, H. Zhao, Y. Li, H. Zhu, D.M. Irwin, D. Wang, G. Zhang, J. Ruan, D. Wu, Genome and Single-Cell Rna-Sequencing of the Earthworm Eisenia Andrei Identifies Cellular Mechanisms Underlying Regeneration. Nat Commun, 11, 2656 (2020).
C. Yang, F. Li, Z. Xiong, K.P. Koepfli, O. Ryder, P. Perelman, Q. Li, G. Zhang, A Draft Genome Assembly of Spotted Hyena, Crocuta Crocuta. Sci Data 7, 126 (2020).
R. R. da Fonseca, A. Couto, A. M. Machado, B. Brejova, C. B. Albertin, F. Silva, P. Gardner, T. Baril, A. Hayward, A. Campos, A. M. Ribeiro, I. Barrio-Hernandez, H. J. Hoving, R. Tafur-Jimenez, C. Chu, B. Frazao, B. Petersen, F. Penaloza, F. Musacchia, G. C. Alexander, H. Osorio, I. Winkelmann, O. Simakov, S. Rasmussen, M. Z. Rahman, D. Pisani, J. Vinther, E. Jarvis, G. Zhang, J. M. Strugnell, L. F. C. Castro, O. Fedrigo, M. Patricio, Q. Li, S. Rocha, A. Antunes, Y. Wu, B. Ma, R. Sanges, T. Vinar, B. Blagoev, T. Sicheritz-Ponten, R. Nielsen, M. T. P. Gilbert, A draft genome sequence of the elusive giant squid, Architeuthis dux. Gigascience 9, (2020).
P. Gelabert, M. Sandoval-Velasco, A. Serres, M. de Manuel, P. Renom, A. Margaryan, J. Stiller, T. de-Dios, Q. Fang, S. Feng, S. Manosa, G. Pacheco, M. Ferrando-Bernal, G. Shi, F. Hao, X. Chen, B. Petersen, R. A. Olsen, A. Navarro, Y. Deng, L. Dalen, T. Marques-Bonet, G. Zhang, A. Antunes, M. T. P. Gilbert, C. Lalueza-Fox, Evolutionary History, Genomic Adaptation to Toxic Diet, and Extinction of the Carolina Parakeet. Curr Biol 30, 108-114 e105 (2020).
H. Pan, T. L. Cole, X. Bi, M. Fang, C. Zhou, Z. Yang, D. T. Ksepka, T. Hart, J. L. Bouzat, L. S. Argilla, M. F. Bertelsen, P. D. Boersma, C. A. Bost, Y. Cherel, P. Dann, S. R. Fiddaman, P. Howard, K. Labuschagne, T. Mattern, G. Miller, P. Parker, R. A. Phillips, P. Quillfeldt, P. G. Ryan, H. Taylor, D. R. Thompson, M. J. Young, M. R. Ellegaard, M. T. P. Gilbert, M. S. Sinding, G. Pacheco, L. D. Shepherd, A. J. D. Tennyson, S. Grosser, E. Kay, L. J. Nupen, U. Ellenberg, D. M. Houston, A. H. Reeve, K. Johnson, J. F. Masello, T. Stracke, B. McKinlay, P. Garc Ia Borboroglu, D. X. Zhang, G. Zhang, Correction to: High-coverage genomes to elucidate the evolution of penguins. Gigascience 9, (2020).
P. Zhang, J. S. Chen, Q. Y. Li, L. X. Sheng, Y. X. Gao, B. Z. Lu, W. B. Zhu, X. Y. Zhan, Y. Li, Z. B. Yuan, G. Xu, B. T. Qiu, M. Yan, C. X. Guo, Y. Q. Wang, Y. J. Huang, J. X. Zhang, F. Y. Liu, Z. W. Tang, S. Z. Lin, D. N. Cooper, H. M. Yang, J. Wang, Y. Q. Gao, W. Yin, G. J. Zhang, G. M. Yan, Neuroprotectants attenuate hypobaric hypoxia-induced brain injuries in cynomolgus monkeys. Zool Res 41, 3-19 (2020).
-- 2019年的研究成果 --
Y. Fan, M. S. Ye, J. Y. Zhang, L. Xu, D. D. Yu, T. L. Gu, Y. L. Yao, J. Q. Chen, L. B. Lv, P. Zheng, D. D. Wu, G. J. Zhang, Y. G. Yao, Chromosomal level assembly and population sequencing of the Chinese tree shrew genome. Zool Res 40, 506-521 (2019).
Pan, H., Cole, T. L., Bi, X., Fang, M., Zhou, C., Yang, Z., Ksepka, D. T., Hart, T., Bouzat, J. L., Argilla, L. S., Bertelsen, M. F., Boersma, P. D., Bost, C. A., Cherel, Y., Dann, P., Fiddaman, S. R., Howard, P., Labuschagne, K., Mattern, T., Miller, G., Parker, P., Phillips, R. A., Quillfeldt, P., Ryan, P. G., Taylor, H., Thompson, D. R., Young, M. J., Ellegaard, M. R., Gilbert, M. T. P., Sinding, M. S., Pacheco, G., Shepherd, L. D., Tennyson, A. J. D., Grosser, S., Kay, E., Nupen, L. J., Ellenberg, U., Houston, D. M., Reeve, A. H., Johnson, K., Masello, J. F., Stracke, T., McKinlay, B., Borboroglu, P. G., Zhang, D. X. & Zhang, G. High-coverage genomes to elucidate the evolution of penguins. Gigascience 8, doi:10.1093/gigascience/giz117 (2019)
M. Farré, Q. Li, I. Darolti, Y. Zhou, J. Damas, A. A. Proskuryakova, A. I. Kulemzina, L. G. Chemnick, J. Kim, O. A. Ryder, J. Ma, A. S. Graphodatsky, G. Zhang, D. M. Larkin, H. A. Lewin, An integrated chromosome-scale genome assembly of the Masai giraffe (Giraffa camelopardalis tippelskirchi). GigaScience 8, (2019)10.1093/gigascience/giz090)
Y. He, H. Pan, G. Zhang, S. He, Comparative study on pattern recognition receptors in non-teleost ray-finned fishes and their evolutionary significance in primitive vertebrates. Science China Life Sciences 62, 566-578 (2019); published online EpubApril 01 (10.1007/s11427-019-9481-8)
K. M. Kapheim, H. Pan, C. Li, C. Blatti, 3rd, B. A. Harpur, P. Ioannidis, B. M. Jones, C. F. Kent, L. Ruzzante, L. Sloofman, E. Stolle, R. M. Waterhouse, A. Zayed, G. Zhang, W. T. Wcislo, Draft Genome Assembly and Population Genetics of an Agricultural Pollinator, the Solitary Alkali Bee (Halictidae: Nomia melanderi). G3 9, 625-634 (2019); published online EpubMar 7 (10.1534/g3.118.200865)
J. Stiller, G. Zhang, Comparative Phylogenomics, a Stepping Stone for Bird Biodiversity Studies. Diversity 11, 115 (2019).
L. Chen, Q. Qiu, Y. Jiang, K. Wang, Z. Lin, Z. Li, F. Bibi, Y. Yang, J. Wang, W. Nie, W. Su, G. Liu, Q. Li, W. Fu, X. Pan, C. Liu, J. Yang, C. Zhang, Y. Yin, Y. Wang, Y. Zhao, C. Zhang, Z. Wang, Y. Qin, W. Liu, B. Wang, Y. Ren, R. Zhang, Y. Zeng, R. R. da Fonseca, B. Wei, R. Li, W. Wan, R. Zhao, W. Zhu, Y. Wang, S. Duan, Y. Gao, Y. E. Zhang, C. Chen, C. Hvilsom, C. W. Epps, L. G. Chemnick, Y. Dong, S. Mirarab, H. R. Siegismund, O. A. Ryder, M. T. P. Gilbert, H. A. Lewin, G. Zhang, R. Heller, W. Wang, Large-scale ruminant genome sequencing provides insights into their evolution and distinct traits. Science 364, eaav6202 (2019)10.1126/science.aav6202).
Y. Wang, C. Zhang, N. Wang, Z. Li, R. Heller, R. Liu, Y. Zhao, J. Han, X. Pan, Z. Zheng, X. Dai, C. Chen, M. Dou, S. Peng, X. Chen, J. Liu, M. Li, K. Wang, C. Liu, Z. Lin, L. Chen, F. Hao, W. Zhu, C. Song, C. Zhao, C. Zheng, J. Wang, S. Hu, C. Li, H. Yang, L. Jiang, G. Li, M. Liu, T. S. Sonstegard, G. Zhang, Y. Jiang, W. Wang, Q. Qiu, Genetic basis of ruminant headgear and rapid antler regeneration. Science 364, eaav6335 (2019)10.1126/science.aav6335).
S. Feng, Q. Fang, R. Barnett, C. Li, S. Han, M. Kuhlwilm, L. Zhou, H. Pan, Y. Deng, G. Chen, A. Gamauf, F. Woog, R. Prys-Jones, T. Marques-Bonet, M. T. P. Gilbert, G. Zhang. The Genomic Footprints of the Fall and Recovery of the Crested Ibis.Curr BioL : CB, ; published online EpubJan 6 (10.1016/j.cub.2018.12.008) (2019).
-- 2018年的研究成果 --
R Rane, D Clarke, S Pearce, G Zhang, A Hoffmann, J Oakeshott. Detoxification Genes Differ Between Cactus-, Fruit- and Flower-Feeding Drosophila. J Hered(2018).
R Rogers, L Zhou, C Chu, R Marquez, A Corl, T Linderoth, L Freeborn, M MacManes, Z Xiong, J Zheng, C Guo, X Xun, M Kronforst, K Summers, Y Wu, H Yang, C Richards-Zawacki,G Zhang, R Nielsen. Genomic Takeover by Transposable Elements in the Strawberry Poison Frog. Mol Biol Evol, 35(12): 2913-2927(2018).
G Zhang. The bird’s-eye view on chromosome evolution. Genome Biology,19:201 (2018)
C Liu, Y Zhang, Y Ren, H Wang, S Li, F Jiang, L Yin, X Qiao, G Zhang, W Qian, B Liu, W Fan. The genome of the golden apple snail Pomacea canaliculata provides insight into stress tolerance and invasive adaptation. Gigascience, 7(9) (2018)
B Qiu, R Larsen, N Chang, J Wang, J Boomsma, G Zhang. Towards reconstructing the ancestral brain gene-network regulating caste differentiation in ants. Nat Ecol Evol, 2(11):1782-91 (2018)
G Zhang. The first AsiaEvo conference, connecting Asian evolutionary biologists to the world National Science Review, 66:1 (2018)
A Kukekova, J Johnson, X Xiang, S Feng, S Liu, H Rando, A Kharlamova, Y Herbeck, N Serdyukova, Z Xiong, V Beklemischeva, K Koepfli, R Gulevich, A Vladimirova, J Hekman, P Perelman, A Graphodatsky, S O'Brien, X Wang, A Clark, G Acland, L Trut, G Zhang. Red fox genome assembly identifies genomic regions associated with tame and aggressive behaviours. Nat Ecol Evol, 46:622 (2018)
H Lewin, G Robinson, W Kress, W Baker, J Coddington, K Crandall, R Durbin, S Edwards, F Forest, M Gilbert, M Goldstein, I Grigoriev, K Hackett, D Haussler, E Jarvis, W Johnson, A Patrinos, S Richards, J Castilla-Rubio, M van Sluys, P Soltis, X Xu, H Yang, G Zhang. Earth BioGenome Project: Sequencing life for the future of life Proceedings of the National Academy of Sciences, 115(17):4325-4333 (2018)
M Zepeda Mendoza, Z Xiong, M Escalera-Zamudio, A Runge, J Thézé, D Streicker, H Frank, E Loza-Rubio, S Liu, O Ryder, J Samaniego Castruita, A Katzourakis, G Pacheco, B Taboada, U Löber, O Pybus, Y Li, E Rojas-Anaya, K Bohmann, A Carmona Baez, C Arias, S Liu, A Greenwood, M Bertelsen, N White, M Bunce, G Zhang, T Sicheritz-Ponten, M Gilbert. Hologenomic adaptations underlying the evolution of sanguivory in the common vampire bat. Nat Ecol Evol, 2(4):659-668 (2018)
C Zhou, S Liu, W Song, S Luo, G Meng, C Yang, H Yang, J Ma, L Wang, S Gao, J Wang, H Yang, Y Zhao, H Wang, X Zhou. Characterization of viral RNA splicing using whole-transcriptome datasets from host species. Scientific reports, 8(1):3273 (2018)
-- 2017年的研究成果 --
C Zhang, L Chen, Y Zhou, K Wang, L Chemnick, O Ryder, W Wang, G Zhang, Q Qiu. Draft genome of the milu (Elaphurus davidianus) GigaScience, 7(2):203 (2017)
A Avalos, H Pan, C Li, J Acevedo-Gonzalez, G Rendon, C Fields, P Brown, T Giray, G Robinson, M Hudson, G Zhang. A soft selective sweep during rapid evolution of gentle behaviour in an Africanized honeybee. Nat Commun, 8(1):351 (2017)
A Hargreaves, L Zhou, J Christensen, F Marlétaz, S Liu, F Li, P Jansen, E Spiga, M Hansen, S Pedersen, S Biswas, K Serikawa, B Fox, W Taylor, J Mulley, G Zhang, R Heller, P Holland. Genome sequence of a diabetes-prone rodent reveals a mutation hotspot around the ParaHox gene cluster. Proceedings of the National Academy of Sciences of the United States of America, 114(29):7677-7682 (2017)
S Mak, S Gopalakrishnan, C Carøe, C Geng, S Liu, M Sinding, L Kuderna, W Zhang, S Fu, F Vieira, M Germonpré, H Bocherens, S Fedorov, B Petersen, T Sicheritz-Ponten, T Marques-Bonet, G Zhang, H Jiang, M Gilbert. Comparative performance of the BGISEQ-500 versus Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing. GigaScience, (2017)
J Gao, Q Li, Z Wang, Y Zhou, P Martelli, F Li, Z Xiong, J Wang, H Yang, G Zhang. Sequencing, de novo assembling and annotating the genome of the endangered Chinese crocodile lizard Shinisaurus crocodilurus. GigaScience, 6(7):1-6 (2017)
J Boomsma, S Brady, R Dunn, J Gadau, J Heinze, L Keller, C Moreau, N Sanders, L Schrader, T Schultz, L Sundstrom, P Ward, W Wcislo, G Zhang, The GAGA Consortium. Forum The Global Ant Genomics Alliance (GAGA) Myrmecological News, 25(2):61-66 (2017)
H Xiong, D Liu, Q Li, M Lei, L Xu, L Wu, Z Wang, S Ren, W Li, M Xia, L Lu, H Lu, Y Hou, S Zhu, X Liu, Y Sun, J Wang, H Yang, K Wu, X Xu, L Lee. RED-ML: a novel, effective RNA editing detection method based on machine learning. GigaScience, 6(5):1-8 (2017)
R Peters, L Krogmann, C Mayer, A Donath, S Gunkel, K Meusemann, A Kozlov, L Podsiadlowski, M Petersen, R Lanfear, P Diez, J Heraty, K Kjer, S Klopfstein, R Meier, C Polidori, T Schmitt, S Liu, X Zhou, T Wappler, J Rust, B Misof, O Niehuis. Evolutionary History of the Hymenoptera. Curr BioL: CB, 27(7):1013-1018 (2017)
R Seki, C Li, Q Fang, S Hayashi, S Egawa, J Hu, L Xu, H Pan, M Kondo, T Sato, H Matsubara, N Kamiyama, K Kitajima, D Saito, Y Liu, M Gilbert, Q Zhou, X Xu, T Shiroishi, N Irie, K Tamura, G Zhang. Functional roles of Aves class-specific cis-regulatory elements on macroevolution of bird-specific features. Nat Commun, 8:14229 (2017)
C Shao, B Bao, Z Xie, X Chen, B Li, X Jia, Q Yao, G Ortí, W Li, X Li, K Hamre, J Xu, L Wang, F Chen, Y Tian, A Schreiber, N Wang, F Wei, J Zhang, Z Dong, L Gao, J Gai, T Sakamoto, S Mo, W Chen, Q Shi, H Li, Y Xiu, Y Li, W Xu, Z Shi, G Zhang, D Power, Q Wang, M Schartl, S Chen. The genome and transcriptome of Japanese flounder provide insights into flatfish asymmetry. Nature genetics, 49(1):119-124 (2017)
-- 2016年的研究成果 --
Z Xiong, F Li, Q Li, L Zhou, T Gamble, J Zheng, L Kui, C Li, S Li, H Yang, G Zhang. Draft genome of the leopard gecko, Eublepharis macularius. GigaScience, 5(1):47 (2016)
W Yin, Z Wang, Q Li, J Lian, Y Zhou, B Lu, L Jin, P Qiu, P Zhang, W Zhu, B Wen, Y Huang, Z Lin, B Qiu, X Su, H Yang, G Zhang, G Yan, Q Zhou. Evolutionary trajectories of snake genes and genomes revealed by comparative analyses of five-pacer viper. Nat Commun, 7:13107 (2016)
H Pan, H Yu, V Ravi, C Li, A Lee, M Lian, B Tay, S Brenner, J Wang, H Yang, G Zhang, B Venkatesh. The genome of the largest bony fish, ocean sunfish (Mola mola), provides insights into its fast growth rate. GigaScience, 5(1):36 (2016)
Z Wang, J Lian, Q Li, P Zhang, Y Zhou, X Zhan, G Zhang. RES-Scanner: a software package for genome-wide identification of RNA-editing sites. GigaScience, 5(1):37 (2016)
S Nygaard, H Hu, C Li, M Schiøtt, Z Chen, Z Yang, Q Xie, C Ma, Y Deng, R Dikow, C Rabeling, D Nash, W Wcislo, S Brady, T Schultz, G Zhang, J Boomsma. Reciprocal genomic evolution in the ant-fungus agricultural symbiosis. Nat Commun, 7:12233 (2016)
J Machado, W Johnson, M Gilbert, G Zhang, E Jarvis, S O'Brien, A Antunes. Bone-associated gene evolution and the origin of flight in birds. BMC genomics, 17(1):371 (2016)
D Almeida, E Maldonado, I Khan, L Silva, M Gilbert, G Zhang, E Jarvis, S O'Brien, W Johnson, A Antunes. Whole-Genome Identification, Phylogeny, and Evolution of the Cytochrome P450 Family 2 (CYP2) Subfamilies in Birds. Genome Biology and Evolution, 8(4):1115-1131 (2016)
-- 2015年的研究成果 --
P Dobrynin, S Liu, G Tamazian, Z Xiong, A Yurchenko, K Krasheninnikova, S Kliver, A Schmidt-Küntzel, K Koepfli, W Johnson, L Kuderna, R García-Pérez, M Manuel, R Godinez, A Komissarov, A Makunin, V Brukhin, W Qiu, L Zhou, F Li, J Yi, C Driscoll, A Antunes, T Oleksyk, E Eizirik, P Perelman, M Roelke, D Wildt, M Diekhans, T Marques-Bonet, L Marker, J Bhak, J Wang, G Zhang, S O'Brien. Genomic legacy of the African cheetah, Acinonyx jubatus. Genome biology, 16(1):277 (2015)
I Khan, Z Yang, E Maldonado, C Li, G Zhang, M Gilbert, E Jarvis, S O'Brien, W Johnson, A Antunes. Olfactory Receptor Subgenomes Linked with Broad Ecological Adaptations in Sauropsida. Molecular Biology and Evolution, 32(11):2832-2843 (2015)
R Borges, I Khan, W Johnson, M Gilbert, G Zhang, E Jarvis, S O'Brien, A Antunes. Gene loss, adaptive evolution and the co-evolution of plumage coloration genes with opsins in birds. BMC genomics, 16(1):751 (2015)
J Cracraft, P Houde, S Ho, D Mindell, J Fjeldså, B Lindow, S Edwards, C Rahbek, S Mirarab, T Warnow, M Gilbert, G Zhang, E Braun, E Jarvis. Response to Comment on "Whole-genome analyses resolve early branches in the tree of life of modern birds". Science (New York, N.Y.), 349(6255):1460 (2015)
X Li, D Fan, W Zhang, G Liu, L Zhang, L Zhao, X Fang, L Chen, Y Dong, Y Chen, Y Ding, R Zhao, M Feng, Y Zhu, Y Feng, X Jiang, D Zhu, H Xiang, X Feng, S Li, J Wang, G Zhang, M Kronforst, W Wang. Outbred genome sequencing and CRISPR/Cas9 gene editing in butterflies.Nat Commun, 6:8212 (2015)
K Kapheim, H Pan, C Li, S Salzberg, D Puiu, T Magoc, H Robertson, M Hudson, A Venkat, B Fischman, A Hernandez, M Yandell, D Ence, C Holt, G Yocum, W Kemp, J Bosch, R Waterhouse, E Zdobnov, E Stolle, F Kraus, S Helbing, R Moritz, K Glastad, B Hunt, M Goodisman, F Hauser, C Grimmelikhuijzen, D Pinheiro, F Nunes, M Soares, ? Tanaka, Z Simões, K Hartfelder, J Evans, S Barribeau, R Johnson, J Massey, B Southey, M Hasselmann, D Hamacher, M Biewer, C Kent, A Zayed, C Blatti, S Sinha, J Johnston, S Hanrahan, S Kocher, J Wang, G Robinson, G Zhang. Social evolution. Genomic signatures of evolutionary transitions from solitary to group living. Science (New York, N.Y.), 348(6239):1139-1143 (2015)
Y Dong, X Zhang, M Xie, B Arefnezhad, Z Wang, W Wang, S Feng, G Huang, R Guan, W Shen, R Bunch, R McCulloch, Q Li, B Li, G Zhang, X Xu, J Kijas, G Salekdeh, W Wang, Y Jiang. Reference genome of wild goat (capra aegagrus) and sequencing of goat breeds provide insight into genic basis of goat domestication. BMC genomics, 16(1):431 (2015)
G Zhang, C Rahbek, G Graves, F Lei, E Jarvis, M Gilbert. Genomics: Bird sequencing project takes off. Nature, 522(7554):34 (2015)
L Yan, X Wang, H Liu, Y Tian, J Lian, R Yang, S Hao, X Wang, S Yang, Q Li, S Qi, L Kui, M Okpekum, X Ma, J Zhang, Z Ding, G Zhang, W Wang, Y Dong, J Sheng. The Genome of Dendrobium officinale Illuminates the Biology of the Important Traditional Chinese Orchid Herb. Molecular Plant, 8(6):922-934 (2015)
K Nadachowska-Brzyska, C Li, L Smeds, G Zhang, H Ellegren. Temporal Dynamics of Avian Populations during Pleistocene Revealed by Whole-Genome Sequences. Curr BioL: CB, 25(10):1375-1380 (2015)
Y Sun, Z Xiong, X Xiang, S Liu, W Zhou, X Tu, L Zhong, L Wang, D Wu, B Zhang, C Zhu, M Yang, H Chen, F Li, L Zhou, S Feng, C Huang, G Zhang, D Irwin, D Hillis, R Murphy, H Yang, J Che, J Wang, Y Zhang. Whole-genome sequence of the Tibetan frog Nanorana parkeri and the comparative evolution of tetrapod genomes. Proceedings of the National Academy of Sciences of the United States of America, 112(11):E1257-62 (2015)
S Kocher, C Li, W Yang, H Tan, S Yi, X Yang, H Hoekstra, G Zhang, N Pierce, D Yu. Erratum to: The draft genome of a socially polymorphic halictid bee, Lasioglossum albipes Genome biology, 16(1):34 (2015)
L Eöry, M Gilbert, C Li, B Li, A Archibald, B Aken, G Zhang, E Jarvis, P Flicek, D Burt. Avianbase: a community resource for bird genomics. Genome biology, 16(1):21 (2015)
M Parks, S Subramanian, C Baroni, M Salvatore, G Zhang, C Millar, D Lambert. Ancient population genomics and the study of evolution. Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 370(1660):20130381 (2015)
J Korb, M Poulsen, H Hu, C Li, J Boomsma, G Zhang, J Liebig. A genomic comparison of two termites with different social complexity. Frontiers in Genetics, 6:9 (2015)
J Zhang, C Li, Q Zhou, G Zhang. Improving the ostrich genome assembly using optical mapping data. GigaScience, 4(1):24 (2015)
E Jarvis, S Mirarab, A Aberer, B Li, P Houde, C Li, S Ho, B Faircloth, B Nabholz, J Howard, A Suh, C Weber, R da Fonseca, A Alfaro-Núñez, N Narula, L Liu, D Burt, H Ellegren, S Edwards, A Stamatakis, D Mindell, J Cracraft, E Braun, T Warnow, W Jun, M Gilbert, G Zhang, Avian Phylogenomics Consortium. Phylogenomic analyses data of the avian phylogenomics project. GigaScience, 4(1):4-9 (2015)
A Georges, Q Li, J Lian, D O’Meally, J Deakin, Z Wang, P Zhang, M Fujita, H Patel, C Holleley, Y Zhou, X Zhang, K Matsubara, P Waters, J Graves, S Sarre, G Zhang. High-coverage sequencing and annotated assembly of the genome of the Australian dragon lizard Pogona vitticeps. GigaScience, 4(1):45 (2015)
-- 2014年的研究成果 --
J Pereira, W Johnson, S O'Brien, E Jarvis, G Zhang, M Gilbert, V Vasconcelos, A Antunes. Evolutionary Genomics and Adaptive Evolution of the Hedgehog Gene Family (Shh, Ihh and Dhh) in Vertebrates PloS one, 9(12):e74132 (2014)
Z Wang, J Zhang, W Yang, N An, P Zhang, G Zhang, Q Zhou. Temporal genomic evolution of bird sex chromosomes. BMC evolutionary biology, 14(1):250 (2014)
R Meredith, G Zhang, M Gilbert, E Jarvis, M Springer. Evidence for a single loss of mineralized teeth in the common avian ancestor. Science (New York, N.Y.), 346(6215):1254390 (2014)
G Zhang, E Jarvis, M Gilbert. A flock of genomes Science (New York, N.Y.), 346(6215):1308-1309 (2014)
A Pfenning, E Hara, O Whitney, M Rivas, R Wang, P Roulhac, J Howard, M Wirthlin, P Lovell, G Ganapathy, J Mouncastle, M Moseley, J Thompson, E Soderblom, A Iriki, M Kato, M Gilbert, G Zhang, T Bakken, A Bongaarts, A Bernard, E Lein, C Mello, A Hartemink, E Jarvis. Convergent transcriptional specializations in the brains of humans and song-learning birds. Science (New York, N.Y.), 346(6215):1256846 (2014)
M Greenwold, W Bao, E Jarvis, H Hu, C Li, M Gilbert, G Zhang, R Sawyer. Dynamic evolution of the alpha (α) and beta (β) keratins has accompanied integument diversification and the adaptation of birds into novel lifestyles. BMC evolutionary biology, 14(1):249 (2014)
Q Zhou, J Zhang, D Bachtrog, N An, Q Huang, E Jarvis, M Gilbert, G Zhang. Complex evolutionary trajectories of sex chromosomes across bird taxa. Science (New York, N.Y.), 346(6215):1246338 (2014)
E Jarvis, S Mirarab, A Aberer, B Li, P Houde, C Li, S Ho, B Faircloth, B Nabholz, J Howard, A Suh, C Weber, R da Fonseca, J Li, F Zhang, H Li, L Zhou, N Narula, L Liu, G Ganapathy, B Boussau, M Bayzid, V Zavidovych, S Subramanian, T Gabaldón, S Capella-Gutiérrez, J Huerta-Cepas, B Rekepalli, K Munch, M Schierup, B Lindow, W Warren, D Ray, R Green, M Bruford, X Zhan, A Dixon, S Li, N Li, Y Huang, E Derryberry, M Bertelsen, F Sheldon, R Brumfield, C Mello, P Lovell, M Wirthlin, M Schneider, F Prosdocimi, J Samaniego, A Vargas Velazquez, A Alfaro-Núñez, P Campos, B Petersen, T Sicheritz-Ponten, A Pas, T Bailey, P Scofield, M Bunce, D Lambert, Q Zhou, P Perelman, A Driskell, B Shapiro, Z Xiong, Y Zeng, S Liu, Z Li, B Liu, K Wu, J Xiao, X Yinqi, Q Zheng, Y Zhang, H Yang, J Wang, L Smeds, F Rheindt, M Braun, J Fjeldså, L Orlando, F Barker, K Jønsson, W Johnson, K Koepfli, S O'Brien, D Haussler, O Ryder, C Rahbek, E Willerslev, G Graves, T Glenn, J McCormack, D Burt, H Ellegren, P Alström, S Edwards, A Stamatakis, D Mindell, J Cracraft, E Braun, T Warnow, W Jun, M Gilbert, G Zhang. Whole-genome analyses resolve early branches in the tree of life of modern birds. Science (New York, N.Y.), 346(6215):1320-1331 (2014)
G Zhang, C Li, Q Li, B Li, D Larkin, C Lee, J Storz, A Antunes, M Greenwold, R Meredith, A Ödeen, J Cui, Q Zhou, L Xu, H Pan, Z Wang, L Jin, P Zhang, H Hu, W Yang, J Hu, J Xiao, Z Yang, Y Liu, Q Xie, H Yu, J Lian, P Wen, F Zhang, H Li, Y Zeng, Z Xiong, S Liu, L Zhou, Z Huang, N An, J Wang, Q Zheng, Y Xiong, G Wang, B Wang, J Wang, Y Fan, R da Fonseca, A Alfaro-Núñez, M Schubert, L Orlando, T Mourier, J Howard, G Ganapathy, A Pfenning, O Whitney, M Rivas, E Hara, J Smith, M Farré, J Narayan, G Slavov, M Romanov, R Borges, J Machado, I Khan, M Springer, J Gatesy, F Hoffmann, J Opazo, O Håstad, R Sawyer, H Kim, K Kim, H Kim, S Cho, N Li, Y Huang, M Bruford, X Zhan, A Dixon, M Bertelsen, E Derryberry, W Warren, R Wilson, S Li, D Ray, R Green, S O'Brien, D Griffin, W Johnson, D Haussler, O Ryder, E Willerslev, G Graves, P Alström, J Fjeldså, D Mindell, S Edwards, E Braun, C Rahbek, D Burt, P Houde, Y Zhang, H Yang, J Wang, Avian Genome Consortium, E Jarvis, M Gilbert, J Wang. Comparative genomics reveals insights into avian genome evolution and adaptation. Science (New York, N.Y.), 346(6215):1311-1320 (2014)
R Green, E Braun, J Armstrong, D Earl, N Nguyen, G Hickey, M Vandewege, J St John, S Capella-Gutiérrez, T Castoe, C Kern, M Fujita, J Opazo, J Jurka, K Kojima, J Caballero, R Hubley, A Smit, R Platt, C Lavoie, M Ramakodi, J Finger, A Suh, S Isberg, L Miles, A Chong, W Jaratlerdsiri, J Gongora, C Moran, A Iriarte, J McCormack, S Burgess, S Edwards, E Lyons, C Williams, M Breen, J Howard, C Gresham, D Peterson, J Schmitz, D Pollock, D Haussler, E Triplett, G Zhang, N Irie, E Jarvis, C Brochu, C Schmidt, F McCarthy, B Faircloth, F Hoffmann, T Glenn, T Gabaldón, B Paten, D Ray. Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs. Science (New York, N.Y.), 346(6215):1254449 (2014)
M Poulsen, H Hu, C Li, Z Chen, L Xu, S Otani, S Nygaard, T Nobre, S Klaubauf, P Schindler, F Hauser, H Pan, Z Yang, A Sonnenberg, Z de Beer, Y Zhang, M Wingfield, C Grimmelikhuijzen, R de Vries, J Korb, D Aanen, J Wang, J Boomsma, G Zhang. Complementary symbiont contributions to plant decomposition in a fungus-farming termite. Proceedings of the National Academy of Sciences of the United States of America, 111(40):14500-14505 (2014)
Q Li, Z Wang, J Lian, M Schiøtt, L Jin, P Zhang, Y Zhang, S Nygaard, Z Peng, Y Zhou, Y Deng, W Zhang, J Boomsma, G Zhang. Caste-specific RNA editomes in the leaf-cutting ant Acromyrmex echinatior. Nat Commun, 5:4943 (2014)
X Fang, I Seim, Z Huang, M Gerashchenko, Z Xiong, A Turanov, Y Zhu, A Lobanov, D Fan, S Yim, X Yao, S Ma, L Yang, S Lee, E Kim, R Bronson, R Šumbera, R Buffenstein, X Zhou, A Krogh, T Park, G Zhang, J Wang, V Gladyshev. Adaptations to a subterranean environment and longevity revealed by the analysis of mole rat genomes. Cell Reports, 8(5):1354-1364 (2014)
N Hudson, M Baker, N Hart, J Wynne, Q Gu, Z Huang, G Zhang, A Ingham, L Wang, A Reverter. Sensory rewiring in an echolocator: genome-wide modification of retinogenic and auditory genes in the bat Myotis davidii. G3 (Bethesda, Md.), 4(10):1825-1835 (2014)
N Terrapon, C Li, H Robertson, L Ji, X Meng, W Booth, Z Chen, C Childers, K Glastad, K Gokhale, J Gowin, W Gronenberg, R Hermansen, H Hu, B Hunt, A Huylmans, S Khalil, R Mitchell, M Munoz-Torres, J Mustard, H Pan, J Reese, M Scharf, F Sun, H Vogel, J Xiao, W Yang, Z Yang, Z Yang, J Zhou, J Zhu, C Brent, C Elsik, M Goodisman, D Liberles, R Roe, E Vargo, A Vilcinskas, J Wang, E Bornberg-Bauer, J Korb, G Zhang, J Liebig. Molecular traces of alternative social organization in a termite genome. Nat Commun, 5:3636 (2014)
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J Cui, W Zhao, Z Huang, E Jarvis, M Gilbert, P Walker, E Holmes, G Zhang. Low frequency of paleoviral infiltration across the avian phylogeny. Genome biology, 15(12):539 (2014)
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C Li, Y Zhang, J Li, L Kong, H Hu, H Pan, L Xu, Y Deng, Q Li, L Jin, H Yu, Y Chen, B Liu, L Yang, S Liu, Y Zhang, Y Lang, J Xia, W He, Q Shi, S Subramanian, C Millar, S Meader, C Rands, M Fujita, M Greenwold, T Castoe, D Pollock, W Gu, K Nam, H Ellegren, S Ho, D Burt, C Ponting, E Jarvis, M Gilbert, H Yang, J Wang, D Lambert, J Wang, G Zhang. Two Antarctic penguin genomes reveal insights into their evolutionary history and molecular changes related to the Antarctic environment. GigaScience, 3(1):27 (2014)
S Li, B Li, C Cheng, Z Xiong, Q Liu, J Lai, H Carey, Q Zhang, H Zheng, S Wei, H Zhang, L Chang, S Liu, S Zhang, B Yu, X Zeng, Y Hou, W Nie, Y Guo, T Chen, J Han, J Wang, J Wang, C Chen, J Liu, P Stambrook, M Xu, G Zhang, M Gilbert, H Yang, E Jarvis, J Yu, J Yan. Genomic signatures of near-extinction and rebirth of the crested ibis and other endangered bird species. Genome biology, 15(12):557 (2014)
G Ganapathy, J Howard, J Ward, J Li, B Li, Y Li, Y Xiong, Y Zhang, S Zhou, D Schwartz, M Schatz, R Aboukhalil, O Fedrigo, L Bukovnik, T Wang, G Wray, I Rasolonjatovo, R Winer, J Knight, S Koren, W Warren, G Zhang, A Phillippy, E Jarvis. High-coverage sequencing and annotated assemblies of the budgerigar genome. GigaScience, 3(1):11 (2014)
G Zhang, B Li, C Li, M Gilbert, E Jarvis, J Wang, Avian Genome Consortium. Comparative genomic data of the Avian Phylogenomics Project. GigaScience, 3(1):26 (2014)
-- 2013年的研究成果 --
J Chiu, X Jiang, L Zhao, C Hamm, J Cridland, P Saelao, K Hamby, E Lee, R Kwok, G Zhang, F Zalom, V Walton, D Begun. Genome of Drosophila suzukii, the spotted wing drosophila. G3 (Bethesda, Md.), 3(12):2257-2271 (2013)
T Tan, M Chen, J Harikrishna, N Khairuddin, M Mohd-Shamsudin, G Zhang, S Bhassu. Deep parallel sequencing reveals conserved and novel miRNAs in gill and hepatopancreas of giant freshwater prawn. Fish & Shellfish Immunology, 35(4):1061-1069 (2013)
H Xiang, X Li, F Dai, X Xu, A Tan, L Chen, G Zhang, Y Ding, Q Li, J Lian, A Willden, Q Guo, Q Xia, J Wang, W Wang. Comparative methylomics between domesticated and wild silkworms implies possible epigenetic influences on silkworm domestication. BMC genomics, 14(1):646 (2013)
I Seim, X Fang, Z Xiong, A Lobanov, Z Huang, S Ma, Y Feng, A Turanov, Y Zhu, T Lenz, M Gerashchenko, D Fan, S Yim, X Yao, D Jordan, Y Xiong, Y Ma, A Lyapunov, G Chen, O Kulakova, Y Sun, S Lee, R Bronson, A Moskalev, S Sunyaev, G Zhang, A Krogh, J Wang, V Gladyshev. Genome analysis reveals insights into physiology and longevity of the Brandt’s bat Myotis brandtii Nat Commun, 4:ncomms3212 (2013)
K Bradnam, J Fass, A Alexandrov, P Baranay, M Bechner, I Birol, S Boisvert, J Chapman, G Chapuis, R Chikhi, H Chitsaz, W Chou, J Corbeil, C Del Fabbro, T Docking, R Durbin, D Earl, S Emrich, P Fedotov, N Fonseca, G Ganapathy, R Gibbs, S Gnerre, E Godzaridis, S Goldstein, M Haimel, G Hall, D Haussler, J Hiatt, I Ho, J Howard, M Hunt, S Jackman, D Jaffe, E Jarvis, H Jiang, S Kazakov, P Kersey, J Kitzman, J Knight, S Koren, T Lam, D Lavenier, F Laviolette, Y Li, Z Li, B Liu, Y Liu, R Luo, I Maccallum, M Macmanes, N Maillet, S Melnikov, D Naquin, Z Ning, T Otto, B Paten, O Paulo, A Phillippy, F Pina-Martins, M Place, D Przybylski, X Qin, C Qu, F Ribeiro, S Richards, D Rokhsar, J Ruby, S Scalabrin, M Schatz, D Schwartz, A Sergushichev, T Sharpe, T Shaw, J Shendure, Y Shi, J Simpson, H Song, F Tsarev, F Vezzi, R Vicedomini, B Vieira, J Wang, K Worley, S Yin, S Yiu, J Yuan, G Zhang, H Zhang, S Zhou, I Korf. Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species. GigaScience, 2(1):10 (2013)
L Orlando, A Ginolhac, G Zhang, D Froese, A Albrechtsen, M Stiller, M Schubert, E Cappellini, B Petersen, I Moltke, P Johnson, M Fumagalli, J Vilstrup, M Raghavan, T Korneliussen, A Malaspinas, J Vogt, D Szklarczyk, C Kelstrup, J Vinther, A Dolocan, J Stenderup, A Velazquez, J Cahill, M Rasmussen, X Wang, J Min, G Zazula, A Seguin-Orlando, C Mortensen, K Magnussen, J Thompson, J Weinstock, K Gregersen, K Røed, V Eisenmann, C Rubin, D Miller, D Antczak, M Bertelsen, S Brunak, K Al-Rasheid, O Ryder, L Andersson, J Mundy, A Krogh, M Gilbert, K Kjær, T Sicheritz-Ponten, L Jensen, J Olsen, M Hofreiter, R Nielsen, B Shapiro, J Wang, E Willerslev. Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse. Nature, 499(7456):74-78 (2013)
Z Wang, J Pascual-Anaya, A Zadissa, W Li, Y Niimura, Z Huang, C Li, S White, Z Xiong, D Fang, B Wang, Y Ming, Y Chen, Y Zheng, S Kuraku, M Pignatelli, J Herrero, K Beal, M Nozawa, Q Li, J Wang, H Zhang, L Yu, S Shigenobu, J Wang, J Liu, P Flicek, S Searle, J Wang, S Kuratani, Y Yin, B Aken, G Zhang, N Irie. The draft genomes of soft-shell turtle and green sea turtle yield insights into the development and evolution of the turtle-specific body plan. Nature genetics, 45(6):701-706 (2013)
T Parchman, Z Gompert, M Braun, R Brumfield, D McDonald, J Uy, G Zhang, E Jarvis, B Schlinger, C Buerkle. The genomic consequences of adaptive divergence and reproductive isolation between species of manakins. Mol Ecol, 22(12):3304-3317 (2013)
G Pan, J Xu, T Li, Q Xia, S Liu, G Zhang, S Li, C Li, H Liu, L Yang, T Liu, X Zhang, Z Wu, W Fan, X Dang, H Xiang, M Tao, Y Li, J Hu, Z Li, L Lin, J Luo, L Geng, L Wang, M Long, Y Wan, N He, Z Zhang, C Lu, P Keeling, J Wang, Z Xiang, Z Zhou. Comparative genomics of parasitic silkworm microsporidia reveal an association between genome expansion and host adaptation. BMC genomics, 14(1):186 (2013)
M Shapiro, Z Kronenberg, C Li, E Domyan, H Pan, M Campbell, H Tan, C Huff, H Hu, A Vickrey, S Nielsen, S Stringham, H Hu, E Willerslev, M Gilbert, M Yandell, G Zhang, J Wang. Genomic diversity and evolution of the head crest in the rock pigeon. Science (New York, N.Y.), 339(6123):1063-1067 (2013)
C Ma, Y Wang, G Zhang, Z Chen, Y Qiu, J Li, J Luo, B Huang, C Jiang, G Huang, X Wan, C Korteweg, J Gu. Immunoglobulin G expression and its potential role in primary and metastatic breast cancers. Current molecular medicine, 13(3):429-437 (2013)
Y Dong, M Xie, Y Jiang, N Xiao, X Du, W Zhang, G Tosser-Klopp, J Wang, S Yang, J Liang, W Chen, J Chen, P Zeng, Y Hou, C Bian, S Pan, Y Li, X Liu, W Wang, B Servin, B Sayre, B Zhu, D Sweeney, R Moore, W Nie, Y Shen, R Zhao, G Zhang, J Li, T Faraut, J Womack, Y Zhang, J Kijas, N Cockett, X Xu, S Zhao, J Wang, W Wang. Sequencing and automated whole-genome optical mapping of the genome of a domestic goat (Capra hircus). Nature biotechnology, 31(2):135-141 (2013)
J Kim, D Larkin, Q Cai, Asan, Y Zhang, R Ge, L Auvil, B Capitanu, G Zhang, H Lewin, J Ma. Reference-assisted chromosome assembly. PNAS, 110(5):1785-1790 (2013)
G Zhang, C Cowled, Z Shi, Z Huang, K Bishop-Lilly, X Fang, J Wynne, Z Xiong, M Baker, W Zhao, M Tachedjian, Y Zhu, P Zhou, X Jiang, J Ng, L Yang, L Wu, J Xiao, Y Feng, Y Chen, X Sun, Y Zhang, G Marsh, G Crameri, C Broder, K Frey, L Wang, J Wang. Comparative analysis of bat genomes provides insight into the evolution of flight and immunity. Science (New York, N.Y.), 339(6118):456-460 (2013)
R Ge, Q Cai, Y Shen, A San, L Ma, Y Zhang, X Yi, Y Chen, L Yang, Y Huang, R He, Y Hui, M Hao, Y Li, B Wang, X Ou, J Xu, Y Zhang, K Wu, C Geng, W Zhou, T Zhou, D Irwin, Y Yang, L Ying, H Bao, J Kim, D Larkin, J Ma, H Lewin, J Xing, R Platt, D Ray, L Auvil, B Capitanu, X Zhang, G Zhang, R Murphy, J Wang, Y Zhang, J Wang. Draft genome sequence of the Tibetan antelope. Nat Commun, 4:1858 (2013)
M Mohd-Shamsudin, Y Kang, Z Lili, T Tan, Q Kwong, H Liu, G Zhang, R Othman, S Bhassu. In-depth tanscriptomic analysis on giant freshwater prawns. PloS one, 8(5):e60839 (2013)
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-- 2012年的研究成果 --
M Allentoft, M Collins, D Harker, J Haile, C Oskam, M Hale, P Campos, J Samaniego, M Gilbert, E Willerslev, G Zhang, R Scofield, R Holdaway, M Bunce. The half-life of DNA in bone: measuring decay kinetics in 158 dated fossils. Proceedings. Biological sciences, 279(1748):4724-4733 (2012)
M Groenen, A Archibald, H Uenishi, C Tuggle, Y Takeuchi, M Rothschild, C Rogel-Gaillard, C Park, D Milan, H Megens, S Li, D Larkin, H Kim, L Frantz, M Caccamo, H Ahn, B Aken, A Anselmo, C Anthon, L Auvil, B Badaoui, C Beattie, C Bendixen, D Berman, F Blecha, J Blomberg, L Bolund, M Bosse, S Botti, Z Bujie, M Bystrom, B Capitanu, D Carvalho-Silva, P Chardon, C Chen, R Cheng, S Choi, W Chow, R Clark, C Clee, R Crooijmans, H Dawson, P Dehais, F De Sapio, B Dibbits, N Drou, Z Du, K Eversole, J Fadista, S Fairley, T Faraut, G Faulkner, K Fowler, M Fredholm, E Fritz, J Gilbert, E Giuffra, J Gorodkin, D Griffin, J Harrow, A Hayward, K Howe, Z Hu, S Humphray, T Hunt, H Hornshøj, J Jeon, P Jern, M Jones, J Jurka, H Kanamori, R Kapetanovic, J Kim, J Kim, K Kim, T Kim, G Larson, K Lee, K Lee, R Leggett, H Lewin, Y Li, W Liu, J Loveland, Y Lu, J Lunney, J Ma, O Madsen, K Mann, L Matthews, S McLaren, T Morozumi, M Murtaugh, J Narayan, D Nguyen, P Ni, S Oh, S Onteru, F Panitz, E Park, H Park, G Pascal, Y Paudel, M Perez-Enciso, R Ramirez-Gonzalez, J Reecy, S Rodriguez-Zas, G Rohrer, L Rund, Y Sang, K Schachtschneider, J Schraiber, J Schwartz, L Scobie, C Scott, S Searle, B Servin, B Southey, G Sperber, P Stadler, J Sweedler, H Tafer, B Thomsen, R Wali, J Wang, J Wang, S White, X Xu, M Yerle, G Zhang, J Zhang, J Zhang, S Zhao, J Rogers, C Churcher, L Schook. Analyses of pig genomes provide insight into porcine demography and evolution. Nature, 491(7424):393-398 (2012)
X Fang, Y Mou, Z Huang, Y Li, L Han, Y Zhang, Y Feng, Y Chen, X Jiang, W Zhao, X Sun, Z Xiong, L Yang, H Liu, D Fan, L Mao, L Ren, C Liu, J Wang, K Li, G Wang, S Yang, L Lai, G Zhang, Y Li, J Wang, L Bolund, H Yang, J Wang, S Feng, S Li, Y Du. The sequence and analysis of a Chinese pig genome GigaScience, 1(1):16 (2012)
C Albertin, L Bonnaud, C Brown, W Crookes-Goodson, R da Fonseca, C Di Cristo, B Dilkes, E Edsinger-Gonzales, R Freeman, R Hanlon, K Koenig, A Lindgren, M Martindale, P Minx, L Moroz, M Nödl, S Nyholm, A Ogura, J Pungor, J Rosenthal, E Schwarz, S Shigeno, J Strugnell, T Wollesen, G Zhang, C Ragsdale. Cephalopod genomics: A plan of strategies and organization. Standards in genomic sciences, 7(1):175-188 (2012)
R Bonasio, Q Li, J Lian, N Mutti, L Jin, H Zhao, P Zhang, P Wen, H Xiang, Y Ding, Z Jin, S Shen, Z Wang, W Wang, J Wang, S Berger, J Liebig, G Zhang, D Reinberg. Genome-wide and caste-specific DNA methylomes of the ants Camponotus floridanus and Harpegnathos saltator. Curr BioL: CB, 22(19):1755-1764 (2012)
G Zhang, X Fang, X Guo, L Li, R Luo, F Xu, P Yang, L Zhang, X Wang, H Qi, Z Xiong, H Que, Y Xie, P Holland, J Paps, Y Zhu, F Wu, Y Chen, J Wang, C Peng, J Meng, L Yang, J Liu, B Wen, N Zhang, Z Huang, Q Zhu, Y Feng, A Mount, D Hedgecock, Z Xu, Y Liu, T Domazet-Lošo, Y Du, X Sun, S Zhang, B Liu, P Cheng, X Jiang, J Li, D Fan, W Wang, W Fu, T Wang, B Wang, J Zhang, Z Peng, Y Li, N Li, J Wang, M Chen, Y He, F Tan, X Song, Q Zheng, R Huang, H Yang, X Du, L Chen, M Yang, P Gaffney, S Wang, L Luo, Z She, Y Ming, W Huang, S Zhang, B Huang, Y Zhang, T Qu, P Ni, G Miao, J Wang, Q Wang, C Steinberg, H Wang, N Li, L Qian, G Zhang, Y Li, H Yang, X Liu, J Wang, Y Yin, J Wang. The oyster genome reveals stress adaptation and complexity of shell formation. Nature, 490(7418):49-54 (2012)
X Li, J Zhu, F Hu, S Ge, M Ye, H Xiang, G Zhang, X Zheng, H Zhang, S Zhang, Q Li, R Luo, C Yu, J Yu, J Sun, X Zou, X Cao, X Xie, J Wang, W Wang. Single-base resolution maps of cultivated and wild rice methylomes and regulatory roles of DNA methylation in plant gene expression. BMC genomics, 13(1):300 (2012)
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Y Li, J Robins, J Ye, Z Huang, Q Wen, G Zhang. Adaptive diversity of innate immune receptor family short pentraxins in Murinae. FEBS letters, 586(6):798-803 (2012)
Q Zhou, H Zhu, Q Huang, L Zhao, G Zhang, S Roy, B Vicoso, Z Xuan, J Ruan, Y Zhang, R Zhao, C Ye, X Zhang, J Wang, W Wang, D Bachtrog. Deciphering neo-sex and B chromosome evolution by the draft genome of Drosophila albomicans. BMC genomics, 13(1):109 (2012)
N Young, A Jex, B Li, S Liu, L Yang, Z Xiong, Y Li, C Cantacessi, R Hall, X Xu, F Chen, X Wu, A Zerlotini, G Oliveira, A Hofmann, G Zhang, X Fang, Y Kang, B Campbell, A Loukas, S Ranganathan, D Rollinson, G Rinaldi, P Brindley, H Yang, J Wang, J Wang, R Gasser. Whole-genome sequence of Schistosoma haematobium. Nature genetics, 44(2):221-225 (2012)
F Chen, W Zhang, Y Liang, J Huang, K Li, C Green, J Liu, G Zhang, B Zhou, X Yi, W Wang, H Liu, X Xu, F Shen, N Qu, Y Wang, G Gao, A San, L JiangBai, H Sang, X Fang, K Kristiansen, H Yang, J Wang, J Han, J Wang. Transcriptome and network changes in climbers at extreme altitudes. PloS one, 7(2):e31645 (2012)
X Jin, M He, B Ferguson, Y Meng, L Ouyang, J Ren, T Mailund, F Sun, L Sun, J Shen, M Zhuo, L Song, J Wang, F Ling, Y Zhu, C Hvilsom, H Siegismund, X Liu, Z Gong, F Ji, X Wang, B Liu, Y Zhang, J Hou, J Wang, H Zhao, Y Wang, X Fang, G Zhang, J Wang, X Zhang, M Schierup, H Du, J Wang, X Wang. An effort to use human-based exome capture methods to analyze chimpanzee and macaque exomes. PloS one, 7(7):e40637 (2012)
-- 2011年的研究成果 --
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V Gladyshev, G Zhang, J Wang. The naked mole rat genome: understanding aging through genome analysis. Aging, 3(12):1124 (2011)
A Jex, S Liu, B Li, N Young, R Hall, Y Li, L Yang, N Zeng, X Xu, Z Xiong, F Chen, X Wu, G Zhang, X Fang, Y Kang, G Anderson, T Harris, B Campbell, J Vlaminck, T Wang, C Cantacessi, E Schwarz, S Ranganathan, P Geldhof, P Nejsum, P Sternberg, H Yang, J Wang, J Wang, R Gasser. Ascaris suum draft genome. Nature, 479(7374):529-533 (2011)
G Yan, G Zhang, X Fang, Y Zhang, C Li, F Ling, D Cooper, Q Li, Y Li, A van Gool, H Du, J Chen, R Chen, P Zhang, Z Huang, J Thompson, Y Meng, Y Bai, J Wang, M Zhuo, T Wang, Y Huang, L Wei, J Li, Z Wang, H Hu, P Yang, L Le, P Stenson, B Li, X Liu, E Ball, N An, Q Huang, Y Zhang, W Fan, X Zhang, Y Li, W Wang, M Katze, B Su, R Nielsen, H Yang, J Wang, X Wang, J Wang. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Nature biotechnology, 29(11):1019-1023 (2011)
E Kim, X Fang, A Fushan, Z Huang, A Lobanov, L Han, S Marino, X Sun, A Turanov, P Yang, S Yim, X Zhao, M Kasaikina, N Stoletzki, C Peng, P Polak, Z Xiong, A Kiezun, Y Zhu, Y Chen, G Kryukov, Q Zhang, L Peshkin, L Yang, R Bronson, R Buffenstein, B Wang, C Han, Q Li, L Chen, W Zhao, S Sunyaev, T Park, G Zhang, J Wang, V Gladyshev. Genome sequencing reveals insights into physiology and longevity of the naked mole rat. Nature, 479(7372):223-227 (2011)
S Nygaard, G Zhang, M Schiøtt, C Li, Y Wurm, H Hu, J Zhou, L Ji, F Qiu, M Rasmussen, H Pan, F Hauser, A Krogh, C Grimmelikhuijzen, J Wang, J Boomsma. The genome of the leaf-cutting ant Acromyrmex echinatior suggests key adaptations to advanced social life and fungus farming. Genome Research, 21(8):1339-1348 (2011)
G Zhang, Z Pei, E Ball, M Mort, H Kehrer-Sawatzki, D Cooper. Cross-comparison of the genome sequences from human, chimpanzee, Neanderthal and a Denisovan hominin identifies novel potentially compensated mutations. Human genomics, 5(5):453-484 (2011)
-- 2010年的研究成果 --
Y Ding, L Zhao, S Yang, Y Jiang, Y Chen, R Zhao, Y Zhang, G Zhang, Y Dong, H Yu, Q Zhou, W Wang. A young Drosophila duplicate gene plays essential roles in spermatogenesis by regulating several Y-linked male fertility genes. PLoS genetics, 6(12):e1001255 (2010)
G Zhang, Z Pei, M Krawczak, E Ball, M Mort, H Kehrer-Sawatzki, D Cooper. Triangulation of the human, chimpanzee, and Neanderthal genome sequences identifies potentially compensated mutations. Human mutation, 31(12):1286-1293 (2010)
R Bonasio, G Zhang, C Ye, N Mutti, X Fang, N Qin, G Donahue, P Yang, Q Li, C Li, P Zhang, Z Huang, S Berger, D Reinberg, J Wang, J Liebig. Genomic comparison of the ants Camponotus floridanus and Harpegnathos saltator. Science (New York, N.Y.), 329(5995):1068-1071 (2010)
G Zhang, G Guo, X Hu, Y Zhang, Q Li, R Li, R Zhuang, Z Lu, Z He, X Fang, L Chen, W Tian, Y Tao, K Kristiansen, X Zhang, S Li, H Yang, J Wang, J Wang. Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome. Genome Research, 20(5):646-654 (2010)
H Xiang, J Zhu, Q Chen, F Dai, X Li, M Li, H Zhang, G Zhang, D Li, Y Dong, L Zhao, Y Lin, D Cheng, J Yu, J Sun, X Zhou, K Ma, Y He, Y Zhao, S Guo, M Ye, G Guo, Y Li, R Li, X Zhang, L Ma, K Kristiansen, Q Guo, J Jiang, S Beck, Q Xia, W Wang, J Wang. Single base-resolution methylome of the silkworm reveals a sparse epigenomic map. Nature biotechnology, 28(5):516-520 (2010)
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-- 早于2010年的研究成果 --
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